LOC_Os03g07080

Expression Profile

RGAP LOCUS ID LOC_Os03g07080
RAP-DB ID Os03g0166800
Function endonuclease/exonuclease/phosphatase family domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Nuclear
score 1.673

3) NUCPRED Prediction
localization Non Nuclear
score 0.56

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.18
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCCR4b
Function assigned as per literature OsCCR4b may participate in heat tolerance in rice
Subcellular localization as per literature Cytoplasm and nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27714489
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0548-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.47
Protein Sequence >LOC_Os03g07080.1 protein
MLTILRVHLPSEIPIVGCEITPYVLLRRPDGGISTEDVHEAIPLDGHFMRYKWYRIQSDRRVAVCNVHPTEQATIQCLGCLKSKIPVAKSYHCSAKCFSD
AWQHHRVLHERALSALNENGNEEEELFGRFGSGNAGIINASLSGSTSNIGQSSSVNNGPTPVYPTGTEKNSGETWFEVGRSRTYTPTADDIGHALRFECV
AVDSETRSSVGAPTSIMTSRVIPAPTPTPRRLIPVNSADVMGHFDLDSRNSSFGTFTVLSYNILADTYATSDTYSYCPTWALSWPYRRQNLLREIIGYHA
DIICLQEVQSNHFEEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHVKKYEVEFNKAAQSLTDAIIPAAQRKVALTRLIKDNIALIA
VLEAKFGSHGADNPSKRQLLCVANTHINVHQDLKDVKLWQVNTLLKGLEKIAVSADIPMLVCGDFNATPGSTPHGLLAMGKVDLMHPDLAIDPLGILRPA
SKLTHQLPLVSAYSSFARMVGAGYDLEHQRRRMDPATNEPLFTNCTRDFTGTIDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR
CKPRVRR

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Cellular comBiological Processonent
GO Term cytosol
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES