LOC_Os03g06940

Expression Profile

RGAP LOCUS ID LOC_Os03g06940
RAP-DB ID Os03g0165400
Function beta-galactosidase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization vacu
score 6

2) CELLO Prediction
localization Extracellular
score 1.959

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.18
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBGal1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.081
NLS score -0.47
Protein Sequence >LOC_Os03g06940.1 protein
MGRGCLAALLGGAVAVAVLVAVVHCAVTYDKKAVLVDGQRRILFSGSIHYPRSTPEMWDGLIEKAKDGGLDVIQTYVFWNGHEPTPGNYNFEGRYDLVRF
IKTVQKAGMFVHLRIGPYICGEWNFGGFPVWLKYVPGISFRTDNEPFKNAMQGFTEKIVGMMKSENLFASQGGPIILSQIENEYGPEGKEFGAAGKAYIN
WAAKMAVGLDTGVPWVMCKEDDAPDPVINACNGFYCDTFSPNKPYKPTMWTEAWSGWFTEFGGTIRQRPVEDLAFGVARFVQKGGSFINYYMYHGGTNFG
RTAGGPFITTSYDYDAPLDEYGLAREPKFGHLKELHRAVKLCEQPLVSADPTVTTLGSMQEAHVFRSSSGCAAFLANYNSNSYAKVIFNNENYSLPPWSI
SILPDCKNVVFNTATVGVQTNQMQMWADGASSMMWEKYDEEVDSLAAAPLLTSTGLLEQLNVTRDTSDYLWYITSVEVDPSEKFLQGGTPLSLTVQSAGH
ALHVFINGQLQGSAYGTREDRKISYSGNANLRAGTNKVALLSVACGLPNVGVHYETWNTGVVGPVVIHGLDEGSRDLTWQTWSYQVGLKGEQMNLNSLEG
SGSVEWMQGSLVAQNQQPLAWYRAYFDTPSGDEPLALDMGSMGKGQIWINGQSIGRYWTAYAEGDCKGCHYTGSYRAPKCQAGCGQPTQRWYHVPRSWLQ
PTRNLLVVFEELGGDSSKIALAKRTVSGVCADVSEYHPNIKNWQIESYGEPEFHTAKVHLKCAPGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVL
EKKCIGLQRCVVAISPSNFGGDPCPEVMKRVAVEAVCSTAA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Molecular Function
GO Term hydrolase activity
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants YES