LOC_Os03g06930

Expression Profile

RGAP LOCUS ID LOC_Os03g06930
RAP-DB ID Os03g0165300
Function homeodomain protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.456

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Nuclear
score 99.94
confidence value 0.72
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/TALE

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBLH6
Function assigned as per literature OsBLH6 may possibly function as secondary cell wall-associated Transcription factor by enhancing the transcription of cell wall biosynthesis genes
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24089432
Reference of localization https://academic.oup.com/pcp/article/54/11/1791/1884930
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os03g06930.1 protein
MATFFSSSTNQRDLTGGGGDGGDMSFQHYPPPSNPYSDSSAGGLIPLPASIVSHSHIAHGGGDEPAAFREAATADGGEMGLQTQLLMAHGAAARGHQGGL
SLSLGTQVPVSLYQYRPAGMAAASLLSPSQSSPMAGRSAQNSIYVQNSRFLRAARELLDEVVNVRDAIKRKGDKNQGKDSGECKGGDAAGDDKAGSNPQE
QESNSAPELSPSERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAARPYTALALQTISRHFRSLRDAIGAQAQAARRGLGEQDASAQG
GGGLSRLRYIDQQLRQQRAMQQFGMMQQPQHAWRPQRGLPESAVSVLRAWLFEHFLHPYPKDSEKLMLARQTGLSRGQVSNWFINARVRLWKPMIEEMYK
EEFGAEMDSNSSSENGGGGGGKGKDEAISSEDRDEFQSPSSAAAARHAGVAGQLNNPFKSEAMGGAALDVGVGVVGLSSCLGGAMGTYATGLNLNHHVHH
PGAGGTSLLHDALHHHHHGGGGDARFVSYGDMADLGGGGGYDGGSVSLTLGLQHCNNAGPVPAEQQGLLYGSAGDFDYINGSDDRQRFGPASQLLHDFVA

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No