LOC_Os03g06630

Expression Profile

RGAP LOCUS ID LOC_Os03g06630
RAP-DB ID Os03g0161900
Function heat stress transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.882

3) NUCPRED Prediction
localization Non Nuclear
score 0.79

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HSF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHSFA2d|OsHSF7
Function assigned as per literature OsHSFA2dI participated in the unfolded protein response by regulating expression of OsBiP1.
Subcellular localization as per literature nucleus and cytoplasm
Cells used for localization experiment rice protoplasts and onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25255693
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/plb.12267
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.142
NLS score 1.34
Protein Sequence >LOC_Os03g06630.1 protein
MEKMMPGMVKEEWPPSSPEEGEAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYFLVR
TNYLNKRSHFYSLRFQGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTK
ANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTRSIDIVPFLNPGEVSQGDQLESTLLFDPRPFAELNDEPAKSELE
NLALNIQGLGKGKQDVNRTRNQPRNQASNETELTDDFWEELLNEGARDDAGIPGMERRRPRYVDALAQKLGYLSNSSQK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES