LOC_Os03g06120

Expression Profile

RGAP LOCUS ID LOC_Os03g06120
RAP-DB ID Os03g0157300
Function PLAC8 family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Nuclear
score 1.752

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 56.21
confidence value 0.14
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMCA1|PAD
Function assigned as per literature OsMCA1 is involved in regulation of plasma membrane Ca2+ influx and ROS generation induced by hypo-osmotic stress in cultured rice cells
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Tobacco BY-2 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22264357
Reference of localization https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-12-11
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.127
NLS score -0.04
Protein Sequence >LOC_Os03g06120.3 protein
MASWENLGDVATVVQLTGLDAVRLISMIVKAASTARLHKRNCRRFAQHLKLIGGLLEQLRVSELKKYPETREPLEQLEDALRRAYLLVHSCQDRSYLYLL
AMGWNIVYQFRKAQNEIDNYLRLVPLITLVDNARVRERMEYIERDQCEYSFDDEDKEVQDALLNPDPSTNPTVVLKKTLSCSYPNLPFNEALRKESEKLQ
VELQRSQSNMDMGQCEVIQHLLGVTKTVASSIPEKCATPKVSEKADSNHTKVSEDSAKTYHDDSPKKQKDACTAPRSSPPSSYGHDLVSSRGSYSDEWHA
DLLGCCSEPSLCLRTFFFPCGTFSKIASIAKNRPMSSSEACNDIMAYSLILSCCCYTCCVRRKLRQKLNIAGGCIDDFLSHLMCCCCALVQEWREVEIRG
AYGERTKISPPSFQYMEH

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term plasma membrane
3
GO Category Biological Process
GO Term transport
4
GO Category Biological Process
GO Term behavior
5
GO Category Biological Process
GO Term response to external stimulus
6
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants YES