LOC_Os03g05040
| RGAP LOCUS ID | LOC_Os03g05040 | ||||
| RAP-DB ID | Os03g0144000 | ||||
| Function | expressed protein | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 7 | ||||
2) CELLO Prediction |
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| localization | PlasmaMembrane | ||||
| score | 2.317 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.62 | ||||
4) Y-Loc Prediction |
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| localization | Cytoplasm | ||||
| score | 65 | ||||
| confidence value | 0.8 | ||||
| Number Of Software Predicting Nucleus | 1 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | MEICA1 | ||||
| Function assigned as per literature | MEICA1 plays roles in preventing aberrant meiotic recombination and regulating crossover formation during meiosis. | ||||
| Subcellular localization as per literature | Chromosome cores | ||||
| Cells used for localization experiment | Anther chromosomes at the meiotic stage | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 28696221 | ||||
| Reference of localization | http://www.plantcell.org/content/29/7/1697.long | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 3 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.091 | ||||
| NLS score | 0.47 | ||||
| Protein Sequence | >LOC_Os03g05040.1 protein MEADGGAAGEEAEERRRRSELGSLVEAIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLWSVESIDESEDAQEEEHSRLFPEIIALTLNISSKH LPVASKCIAEDTVHAVGDFILELLTLTESSILDKKLGTTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNIAQITACTIQ SLCKIGTHAASSGGSQVILLNISWKGIISLLQLGKGMVEEKVNVREIILIPISVAIESLRVATERWCVPLQEVLGTAEARRAFLPIKYFLTNAVRICSIY PSETMAIYKSIIRNPQLKAASELLFELLEPSSFLLLDTLMKSTEVSPESKCQLVQYFLEKVRTGNPEYTGEVDHTMNFATLGCIFSVDSDVDNINRALLP AEFTVFLHFLNASPWLREEVVIELCKKLHLFLNILTLEDVYSYVLGCQIPALSSDDDSPKVVWQPVYTSLIQALKTFMIAASSSSAAWSEFEVFLLENLF HPHFLCLEILTELWCFFMHYAEAETSTYLINQLFLLLKTLASPEEVLAPLSALRKLARASCNILSYASSATIDQIYTMLNDSSSKSSILYLALLMEGFPF DSLSRGVKEHAVKTLFTSFAGYLQNQNYFKNHGEINLPTSSSSGIIGTSPDSSKNLLVKHISSILVIITHMRHLCAFSELEKLTLELHTLFMSSFDNSNT AISQCKPSMASFMAILGHLNTTEDDANPLCSAMWDLFHFLLRERHWALIHLAMGSFGYFAARTSFAQLWKFVPVDAALSYTCTGVDIDEDGFMSELKAFL QKEVALRDDKWSEEQICSLVSEGRMLKKLVESCLEIPLVPEPEKVSITNYVKTKKRKMPDGICEGMPENVSVTNDVETKKRKMPDRICEGMMLVQNGLKI MRSALSETDLAELKDRFAVHLSRLEDAVSHLASFSDKI |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | No | ||||