LOC_Os03g05020

Expression Profile

RGAP LOCUS ID LOC_Os03g05020
RAP-DB ID Os03g0143800
Function PIR, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization PlasmaMembrane
score 2.766

3) NUCPRED Prediction
localization Non Nuclear
score 0.77

4) Y-Loc Prediction
localization Nuclear
score 56.7
confidence value 0.25
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LPL2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score -0.16
Protein Sequence >LOC_Os03g05020.1 protein
MAIPVEEAIAALSTFSLEDEQPDVQGLAVLLSSERYATNSPIEYSDVAAYRLSLGEDTKAINQLNTLIQEGKEMASLLYTYRSCVKALPQLPDSMKHSQA
DLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERLVNGPTITHFWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSTQWQDTDTM
REELDDLQNSVEDILQVLIVFCVESLELDFALLFPERHTLLRVLPVLVVLATSSEKESESLYKRVKMNRLLNIFKMIILKSSDGADNDWSRDIKGNMYDI
VVEGFQLLSRWTGRIWEQCAWKFSRPCKEPPSDSQHGSTTFFDYEKVVRWNYTGEERRALLELIGYIKSIGLMMQRCDTLVSEALWETIHMEVQDFVQDK
LDTMLRTTFRKKKDLSRILSDMRTLSADWMANTSKGDPEHNSLETEEMRQSTFYPRPVAPTAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDL
KQLETFFYKLSFFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVEHVTETQDAGLLESVLIPFDLYNDSAQHALTCLKQRFLYDEI
EAEVDLSFDLLVEKLNEIIFTYYKSCAASTLLDSSFTYLCDDGEKYFVKPLRFDAIFKLRRVMVLGRTIDLRSLITQRMNKLFRENIDFLLERFESGDLC
GVVELQQLLDILELTHQSISKFLELDSYSLMLSEMQENLSLVSYSSRISSQIWNEMQTDFLPNFILCNTTQRFVRSLKGTHHSSQRSSASTGKAYFYCGS
HDLTMAYQGISGLYRDFFGIPHMFAVVKLLGSRSLPGIIRALLDHISSKITAMVPKITALQEALPKSIGLLSFDGGIAGCQKIVHEILTWEAKSEVKTEV
LHDLKEIGSALYWMSLLDIVLRQIDTTQFMQSAPWLGLIPGNDGQVKHAYSDNTPFTTLLSAATNAVASSPACPNPSSFLVMAKQAEAASLLYKSNLNSG
SVLEYALAFTSAALDRHYSKWSATPKTGFIDITTSKDFYRVFSGLQYSYLEESINPSRKQEMLGDSVAWAGCTIMYLLGQQQHFELFDFSYQFLNVAEVE
NATVSLYQYSDRNKSPNFLQGYEGILEAMRKARRLNNHVFSMLRARCPLEDKIACAIKPSGAPLHRMKFTNTVSAFETLPQRAT

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cytoplasm
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term cell differentiation
7
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No