LOC_Os03g04020

Expression Profile

RGAP LOCUS ID LOC_Os03g04020
RAP-DB ID Os03g0132200
Function expansin precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Extracellular
score 2.018

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.24
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) EXPLA1
Function assigned as per literature GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity.
Subcellular localization as per literature Individually localized to cell wall but when expressed with GW2, localized to Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29958473
Reference of localization https://www.mdpi.com/1422-0067/19/7/1904
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.04
Protein Sequence >LOC_Os03g04020.1 protein
MAVSVRCCFGSSSLSHHARLLLVIVALLAPRLASGCDRCVRRSRAAYYTSSLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKK
LCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGS
SSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEWK

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term anatomical structure morphogenesis
3
GO Category Biological Process
GO Term cell growth
4
GO Category Cellular comBiological Processonent
GO Term cell wall
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES