| RGAP LOCUS ID |
LOC_Os03g03990 |
| RAP-DB ID |
Os03g0131900 |
| Function |
signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.694 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.09 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OscpSRP43|PGL3 |
| Function assigned as per literature |
Oryza sativa cpSRP43 (OscpSRP43) was required for the normal development of chloroplastsand photosynthesis in rice |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26600124 |
| Reference of localization |
http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0143249&type=printable |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.113 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g03990.1 protein
MEAVLRHPSLSRLKPPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRNPASKGGDDDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLV
EWKDGHEPSWIPAEAIAADVVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPERAGGGLTPLH
IAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQDVLAKTPKGNPATFERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGGDREW
VRAAWVAEDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWEPAENVDAELLQEFEQRQSGVAAGGDAPPPPPVAG |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
chromatin binding |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
