| RGAP LOCUS ID |
LOC_Os03g03370 |
| RAP-DB ID |
Os03g0125100 |
| Function |
fatty acid hydroxylase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
9 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.753 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.15 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.51 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
DSM2 |
| Function assigned as per literature |
DSM2 gene significantly contributes to control of the xanthophyll cycle and ABA synthesis, both of which play critical roles in the establishment of drought resistance in rice |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
Arabidopsis mesophyll protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
20852032 |
| Reference of localization |
http://www.plantphysiol.org/content/plantphysiol/early/2010/09/17/pp.110.163741.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.116 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g03370.1 protein
MAVARLVAARAPLLSPAAVAAAHRSPPALLRLAFAPLPARRLAVPLRVAVGEPEPEEDARRAVAERAARKQSERRTYLVAAVMSSLGITSMAAAAVYYRF
AWQMEGSGEIPVTEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPRDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGIT
LFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGPKELEEVGGIEELEKEIKRRIKRKETLDAIQ |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
