| RGAP LOCUS ID |
LOC_Os03g03150 |
| RAP-DB ID |
Os03g0123300 |
| Function |
WD repeat-containing protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.725 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.4 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
81.17 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCCS52A|TAD|TE |
| Function assigned as per literature |
TE regulates the plant-specific postembryonic shoot branching and tillering, which are major determinants of plant architecture and grain yield |
| Subcellular localization as per literature |
Nucleus and cytoplasm |
| Cells used for localization experiment |
Arabidopsis protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
22434195 |
| Reference of localization |
https://www.nature.com/articles/ncomms1716.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.094 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os03g03150.2 protein
MDHHHHHLPPPPPRSPMENSASSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNLALFDLAPSPSHHDAAAAAASP
GAPPPSGSTPASSPYCALLRAALFGPTTPDRVASSASACSSSSSAGASPVGSPATGNIFRFKAEVPRNAKRALFSDGDDEGVLFPGVFTTRGTGPRKIPR
SPYKVLDAPALQDDFYLNLVDWSSHNILAVGLGNCVYLWNACSSKVTKLCDLGVDDNVCSVGWAQRGTHLAVGTNQGKVQVWDATRCKRIRTMESHRMRV
GALAWNSSLLSSGSRDKSILHHDIRAQDDYISRLAGHKSEVCGLKWSYDNRQLASGGNDNRLYVWNQHSAHPVLKYTEHTAAVKAIAWSPHLHGLLASGG
GTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPS
PKSQSSDSLSSIGATSFVRSYIR |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
signal transducer activity |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
cell growth |
|
| 13 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
