LOC_Os03g02160
| RGAP LOCUS ID | LOC_Os03g02160 | ||||
| RAP-DB ID | Os03g0112700 | ||||
| Function | zinc finger C-x8-C-x5-C-x3-H type family protein, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.392 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.55 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 69.51 | ||||
| confidence value | 0.15 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | C3H | ||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | Ehd4 | ||||
| Function assigned as per literature | Ehd4 is a novel Oryza-genus-specific regulator of Ehd1, and it plays an essential role in photoperiodic control of flowering time in rice | ||||
| Subcellular localization as per literature | Nucleus | ||||
| Cells used for localization experiment | Rice protoplasts | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 23437005 | ||||
| Reference of localization | http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003281#abstract0 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.073 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os03g02160.3 protein MPQTSSSAHSNVESHHDHYPSWSQVQHDPKNSLQAGSGKDLNSRYDIAQKLPSQRITRDVPSPVFAWSPSESRTASSQHEGSCLSSTTNLCTHDELHSSI ASAKAKSFAPATPVEDRGSSSPSGMLSLSERAPICSPQSAPSASASDTCKMEENMNQQKTLEADISNTSVNQSPQSKILPESSPDNQDAEHEYRSPPPIS ESKELSPQSRTTPGSSPDNQDTEREYPSPPPISGSKEISPQSRTILESSPDNQDNGHEYPSPPPIPESIELSPHSKALPESSPDNQDIEPECPSPPQIPE SKELSRQSKILPESSPGNQDIEPECPSPPQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIKCEDPSPTPISKS KEVSPQSKILSESYLDNQDVERECPSSILITESKELAVDLPGSISLAPEKTASTDVGENSSLAFIFPKSTLAGDDALKSVFDMAKAHLECEDSKVKEELY VESTVVIRDDMVVNPASGVESIDMSENLLESLMEQSCGTFYMDGTTALEGFLSGSTKEEPQCSSPIALSTCSSPIALSPWGEHGYYQGDSVGSSLWGVQD DDPIGNIWPLSSQAPALQYSSAGSTAHFIDEATVTHGNNGVVLSSTPGEEVGLPNSGVCTDWGLVEQVNPETNDASVSMIDKNSGLVDSQPSANDGSDVG TARNTNHNTNLSLNHETAVPLSRSSGEASRKHGFITDLNVATSEEALGNTKNWNPYAGNANRGSQRNHHRDRYSQISESWLLSSNYSRSRSDGFGTGGSS RSTPRGQTQRGICKFHENGYCRKGASCNYLHP |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | YES | ||||