LOC_Os02g57400
| RGAP LOCUS ID | LOC_Os02g57400 |
| RAP-DB ID | Os02g0819400 |
| Function | 2-phosphoglycerate kinase-related, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 7 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 3.951 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.44 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 63.85 |
| confidence value | 0.86 |
| Number Of Software Predicting Nucleus | 3 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsLpa1 |
| Function assigned as per literature | Involved in Shoot Gravitropism, Regulates Plant Architecture in Rice |
| Subcellular localization as per literature | Nucleus |
| Cells used for localization experiment | onion peel cells and rice protoplast |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 23124325 |
| Reference of localization | http://www.plantphysiol.org/content/161/1/317 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.107 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os02g57400.1 protein MMRGFTDEKQNPLLYASTYHAGECLDPVAVAQAKAKRKAQKLDIVSHPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMVIDSLDRL ITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVRAKYMTLDPAKNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQS VAAIHATVFSCLRRREAGEQLYDLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSVTKAWHVDKNNGNGSLDGTSSDKSTKNP MYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHTGSVDDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDPPDAGTDEDLTDEERD MHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKNIHGAADGDVVDDEGSGNDRFHHNLAFFLKMSKKVAATELPCA |
GO Analysis |
|
| Presence of Splice variants | YES |