LOC_Os02g57270

Expression Profile

RGAP LOCUS ID LOC_Os02g57270
RAP-DB ID Os02g0817800
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Nuclear
score 3.426

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 82.11
confidence value 0.15
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB_related

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RTBP1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.139
NLS score 0.44
Protein Sequence >LOC_Os02g57270.2 protein
MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDC
KGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQE
DSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAA
RNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQG
KNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSAS
SQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVP
QELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants YES