LOC_Os02g57250

Expression Profile

RGAP LOCUS ID LOC_Os02g57250
RAP-DB ID Os02g0817600
Function OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 3.674

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AUX/IAA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIAA10
Function assigned as per literature Knockdown of OsIAA10 enhances the resistance of rice toRice dwarf virus (RDV) infection
Subcellular localization as per literature Nucleus and cytoplast
Cells used for localization experiment Tobacco leaf
NUCLEAR or Not Nuclear NUCLEAR
PMID 27606959
Reference of localization http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005847
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os02g57250.1 protein
MRGGVAGPTAGEPPGTEAEAEEVEESSAGDDEELELGLSLGSKKQQQQQHAPCRILTARDLQPAAALSPDSSVSSSSPAAAAAAGGKRAEGPTATTSPGT
VASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTK
PSIGLCASHNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQRYQGIHRTIASTRGRS

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES