LOC_Os02g56540

Expression Profile

RGAP LOCUS ID LOC_Os02g56540
RAP-DB ID Os02g0810200
Function kinesin motor domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5.5

2) CELLO Prediction
localization Nuclear
score 2.545

3) NUCPRED Prediction
localization Non Nuclear
score 0.54

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.32
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) STD1
Function assigned as per literature STD1 is involved in regulating normal cell division and organ development
Subcellular localization as per literature Nucleus
Cells used for localization experiment root -tip cells of transgenic rice plants
NUCLEAR or Not Nuclear NUCLEAR
PMID 30071144
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14056
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.132
NLS score -0.47
Protein Sequence >LOC_Os02g56540.1 protein
MTTPLKTPASKHRLHFPAMTPRNGGGGGAAAGGTEHPVEVIGRIRNLAAGAGGASALEIAGGGTAVRVRGDAGGCRDFTLDGVSVSEEEDLEGFYRRFVR
SRIEGVRVGAKCTVMVYGPTGSGKSHTMFGCAKQPGIVYRALRDILEGGGGGGGGVSGGGGEGDGRGEDDAGFGMGLFVQVAVLEIYNEEIYDLLVGSGA
NAKGNAPKARLEVMGKKAKNATYISGNEAGKISREVAKVEKRRIVKSTLCNERSSRSHCMIILDVPSVGGRLMLVDMAGSENIEAAGQTGFEAKMQTAKI
NQGNTALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTVSTLEYGAKAKCIIRAAHAATPRDKMSSEESSTMLNSRIVA
MNQFIYNLQKENKLREKERNEAQSVLRKKEEELAQLRAKLKLIEGQGAAAKEEEINSKVMEKTQSLRTELMKMEEKMLRQQQELLALQQRLKEVEREKPV
QQDIIGGRLLARLSEMSARADQSMSMDMSIDFDMGDQPAAQDVKVIKEDTRKQGQIWSQANTAGSCTSAVEQEDDVVRLSGYPEKVVLSTVFEEGDEEED
KDSGVEEEVCKEVVEESYVMQQPLAEPEDPATRNNRIQNIFRLCGNHRELAKKVQSPAKKAFGDENNEPAKQTFGDENKQQPAKRVFGDENKDPSAWGAI
EPPMCDVRVTDSPVSSQLSPIVCQVVDDAKLPVSEQLKSCNALEAADENKENNASGQDGLLEVYIKWESGHLIKGLKLLSNSCLSDLRKLLEDHFEEAGS
KQQQQFTFLLLGDPSGAPVSREKEAGVPISKLPSCNNQPNSYLACLRAVKKQPATEQMPFSPLESKLNSALNDVHLAALSPKVNPMSPNYIRELRA

GO Analysis
1
GO Category Biological Process
GO Term cellular process
2
GO Category Cellular comBiological Processonent
GO Term cytoplasm
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Molecular Function
GO Term motor activity
Presence of Splice variants No