LOC_Os02g56500

Expression Profile

RGAP LOCUS ID LOC_Os02g56500
RAP-DB ID Os02g0809500
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Mitochondrial
score 1.098

3) NUCPRED Prediction
localization Non Nuclear
score 0.48

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSEC24
Function assigned as per literature OsSEC24 stimulate roots formation under iron deficiency by enhancing rhizosphere acidification
Subcellular localization as per literature ER
Cells used for localization experiment transgenic rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25711814
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945215000138
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.125
NLS score -0.47
Protein Sequence >LOC_Os02g56500.5 protein
MMSNGHSNSSKSLERFISRRALQMGSSAPCKTWALGFFCGVCIVYLFGVALPPIQILMIRSVHPPVRRAILLNSTSTEPGGATETDDLSVLQEKIEIATN
SKDINEADKMHLYNAWSTLLDTTSDEVMKSSDVPRPPHLENCRLKWERNKKFDSYSDNGVFPPWTLWKGSLGLELFNQNYSDSEEWRQMFFRSNAKSDRA
PYPPWIAGSDEENYPLTRQVQRDVWIHQHPPNCSDPSLRFLYADWERLPGFGIGAQLAGMSGLLAIAIKERRILVAGYYNRADHNGCKGLARSSWSCYFL
PETSADCQKRALDLMQSKDSRENGIIKVKENYTSKQIWAGHIPRIWGRPWKYMQPTTEIDGRLVKNHCKMDRRWWIAQALRYLMRFQSEYMCRLLNVARH
SAFGMQAAKMVLENVPDPPKPSISRTESDIERLVWSEHKPYIPGPLISMHVRMGDKACEMEVVGFEKYMELAGRLRKRFPSLKNIWLSTEMQEVIDETKL
YPKWNFYFTNVTRQDVNVSMAMYEASLGRETSTNYPLVNFIMATEADFFIGALGSTWCYLIDGMRNTAGKVMSGYLSVNKDRFW

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term mitochondrion
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES