| RGAP LOCUS ID |
LOC_Os02g56130 |
| RAP-DB ID |
Os02g0805200 |
| Function |
PCNA - Putative DNA replicative polymerase clamp, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.368 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.1 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
83.95 |
| confidence value |
0.32 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPCNA|PCNA |
| Function assigned as per literature |
PCNA may be a key protein in amechanism of coordinating DNA replication and repair incombination with FEN-1 |
| Subcellular localization as per literature |
Nuclei of the interphase cells |
| Cells used for localization experiment |
Tobacco BY-2cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
11851910 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1046/j.1365-313x.2001.01184.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.099 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os02g56130.1 protein
MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVT
FMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQ
EPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEEMKS |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
enzyme regulator activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| Presence of Splice variants |
No |
