| RGAP LOCUS ID |
LOC_Os02g56120 |
| RAP-DB ID |
Os02g0805100 |
| Function |
OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.17 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.29 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.92 |
| confidence value |
0.89 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
AUX/IAA |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsIAA9 |
| Function assigned as per literature |
OsIAA9 is a canonical Aux/IAA protein, and it causes auxin-related phenotypes including lateral root formation and gravitropic response when expressed in Arabidopsis |
| Subcellular localization as per literature |
Predominantly in the nucleus but slight expression in the cytoplasm also |
| Cells used for localization experiment |
Root tips of transgenic Arabidopsis seedlings |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
26734051 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2015.01156/full |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.121 |
| NLS score |
0.15 |
| Protein Sequence |
>LOC_Os02g56120.2 protein
MELELGLAPPNSGHLVVDELSSSSSSGGGSGSAPVSASSAGKRGFREAFQETLLLFDDGSCCNTSDDDCRRRKKTVVGWPPVSSARRACGGANYVKVKKE
GDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKILG |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
