LOC_Os02g55080

Expression Profile

RGAP LOCUS ID LOC_Os02g55080
RAP-DB ID Os02g0793900
Function snf1-related kinase interactor 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 3.089

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.96
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HDR1
Function assigned as per literature Associates with OsK4 and functionally regulate flowering time via the photoperiod-dependent pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice leaf protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26954091
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005927
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.148
NLS score 0.15
Protein Sequence >LOC_Os02g55080.1 protein
MEEPASADPPRIFWKSRRRSASANGRSLQQELNKEAADEQLNNQAHEEAMKIDDANAVSTDDDVHPDPKANLSEKRKALFEPLEPINGKRSSAEMLLPPP
DFEPASYPKGWLVGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERKKRTEIEKENSMLHEQVSMLMNMLDENEAFDE
EGEAPPPDTL

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No