LOC_Os02g54160

Expression Profile

RGAP LOCUS ID LOC_Os02g54160
RAP-DB ID Os02g0782700
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.072

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsEREBP1
Function assigned as per literature OsEREBP1 is associated with biotic and abiotic stress tolerance in rice
Subcellular localization as per literature Chloroplast nucleoids
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26035591
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127831
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.123
NLS score 1.58
Protein Sequence >LOC_Os02g54160.2 protein
MCGGAIIHHLKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTIT
TAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVE
QKPTVKPAFNNLANANAFVYPSANFTSNKPFVQPDNMPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGWENDTKTPDITSIAPISTIAEVDESAFIKSS
TNPMVPPVMENSAVDLPDLEPYMRFLLDDGAGDSIDSLLNLDGSQDVVSNMDLWSFDDMPVSDFY

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES