LOC_Os02g53670

Expression Profile

RGAP LOCUS ID LOC_Os02g53670
RAP-DB ID Os02g0776700
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12.5

2) CELLO Prediction
localization Nuclear
score 4.784

3) NUCPRED Prediction
localization Non Nuclear
score 0.73

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB_related

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CTMyb1
Function assigned as per literature CTMyb1 is a regulator of the gibberellin response of the gene that mediates the fine-tuning of the promoter binding complex in germinated rice seeds
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25559339
Reference of localization https://www.tandfonline.com/doi/full/10.1080/09168451.2014.998620
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.135
NLS score 0.15
Protein Sequence >LOC_Os02g53670.1 protein
MEVGGPQDALDNRSDDNDFDKNDNSDPVVYQLVRVEGDGTLIPATEDEVLQFETFLHDEKVDDDLPSIDDVTHVEEYFTNDCIVKKPEFEEGPSKLDTAD
VQTQKLDAGLEEDRLCTLNDSIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTETTKSTVLNDLSSDKEKADACSKPVNEASAGQSVSGVTSSVPDF
SILKGEVCLDDLTMRELQEAFRATFGRQTTVKDKLWLKRRIAMGLINSCDVPSSGCVVRDYKVIAMGAKQEIPVVEAIPKMELEANLVRDQVMNPGHERD
LPSSLSYHSEEQQRSSKRLKRVPTDNDEPQVTIFAEQGTTKRIRKPTKRYIEELSDIDTHESTGRLSSPGKRHVYDEVLLRPRIAPLHEVDSLSTAYPTR
EDTLGGCSVHVPYVSRMRRGRPRSNFIPFLDPEPSVECTEAPAADVVNLEKEGERKNHQKNTGKKGVHVETSCEKDVQGLQDKDFCDSDDNPKTKRGGKR
KHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRTSVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPVSILLRVKKLAEMQSQAGDV
RVPIKFSGQSTTVVQGKVSGFL

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES