LOC_Os02g53140

Expression Profile

RGAP LOCUS ID LOC_Os02g53140
RAP-DB ID Os02g0771100
Function COP1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.619

3) NUCPRED Prediction
localization Nuclear
score 0.8

4) Y-Loc Prediction
localization Nuclear
score 73.43
confidence value 0.52
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) COP1|PPS
Function assigned as per literature COP1 protein bears a bipartite-type NLS and its nuclear import is mediated preferentially by the rice importin alpha1b which contribute to the regulation of plant nuclear protein transport.
Subcellular localization as per literature Nucleus
Cells used for localization experiment  onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 11124253
Reference of localization http://www.jbc.org/content/276/12/9322.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.12
NLS score 0.03
Protein Sequence >LOC_Os02g53140.1 protein
MGDSTVAGALVPSVPKQEQAPSGDASTAALAVAGEGEEDAGARASAGGNGEAAADRDLLCPICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNY
LTKAQLYPNFLLDKVLKKMSARQIAKTASPIDQFRYALQQGNDMAVKELDSLMTLIAEKKRHMEQQESETNMQILLVFLHCLRKQKLEELNEIQTDLQYI
KEDISAVERHRLELYRTKERYSMKLRMLLDEPAASKMWPSPMDKPSGLFPPNSRGPLSTSNPGGLQNKKLDLKGQISHQGFQRRDVLTCSDPPSAPIQSG
NVIARKRRVQAQFNELQEYYLQRRRTGAQSRRLEERDIVTINKEGYHAGLEDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAG
VSKRIKVFEFSTVVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKV
WCTKQEASAINIDMKANICSVKYNPGSSHYVAVGSADHHIHYFDLRNPSAPVHVFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKENCPVRTFRGHK
NEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAANHRFVSSDLDDADDDPGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term reproduction
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term secondary metabolic process
10
GO Category Cellular comBiological Processonent
GO Term nucleus
11
GO Category Biological Process
GO Term response to stress
12
GO Category Biological Process
GO Term DNA metabolic process
13
GO Category Biological Process
GO Term response to external stimulus
14
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No