LOC_Os02g52250

Expression Profile

RGAP LOCUS ID LOC_Os02g52250
RAP-DB ID Os02g0759800
Function SKIP/SNW domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.902

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 85.46
confidence value 0.52
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSKIPa
Function assigned as per literature OsSKIPa positively regulates cell viability and stress tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epithelial cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 19339499
Reference of localization http://www.pnas.org/content/106/15/6410.long#F1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.185
NLS score 0.22
Protein Sequence >LOC_Os02g52250.1 protein
MASLKELLPTPKAAASTFYDHSSDPWFKERYGGESAQSDAAAAAAKPSGPAKPVPPYGKRGGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKI
LALTVDAKGSVAFDAVVKQGENASKIVYSKHSDLVPKIATADSEATADDEEYQKQIEETTERTKAALEKVVNVRLSAAQPKNVPTHDSESKFIKYKPSQQ
SAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFA
KLSEALYVAEQKAREAVQMRSKVQRELQLKEKERKEQELRALAQKARMERTGAPPAPTGVPAGGGRGAVDDREEDMDLEQPREQRRESREEREARIERDR
IREERRRERERERRLEARDAAMGKKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNIYSKGLFTAQPTLSTLYRPKK
DGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSGKRDRPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIGSGGAMRASGGSSMRDDYEGGGSGRSR
INFERGR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Cellular comBiological Processonent
GO Term nucleolus
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term biological_process
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants No