LOC_Os02g51860

Expression Profile

RGAP LOCUS ID LOC_Os02g51860
RAP-DB ID Os02g0755000
Function dehydration response related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 5

2) CELLO Prediction
localization Chloroplast
score 1.05

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 4
confidence value 0.09
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTSD2|OsQUA2
Function assigned as per literature OsQUA2 gene encodes a putative pectin methyltransferase
Subcellular localization as per literature Golgi appartus
Cells used for localization experiment Nicotiana benthamiana leaf
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28495893
Reference of localization http://www.plantphysiol.org/content/174/3/1595.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.29
Protein Sequence >LOC_Os02g51860.1 protein
MSRALYRGASGIGGKPVAGYDAADEARYDPKEPSENGIGGAGGRGRKRHLAVAAVKIGVLVLAAAALVGSVAWAGSLYAGRGAAAAAAAAAASRGYRRLQ
EQLVTDLLDIGELAGGGVRAREAEVCVPEYENYVPCYYNVSDAVDVADLGGGVVISYERQCSREGKIACLVAPPRSYRIPVRWPSGKGFIWKDNVRISGQ
EFSSGSLFKRMMVEEDQISFPSDAHMADGVEDYAHQIAEMIGLRNEFNFNEAGVRTVLDIECGFGTLGAHLFQRDLLTMCIANYEASGSQVQITLERGIP
AMIGSFASKQLPYPYLSFDMVHCAKCNIEWDKNDGGFLVEVDRLLRPSGYFVWTSSLNTHRALRDKENQKKWRTIRDFADSLCWEMLSQQDETIVWKKTN
KLDCYSSRKSGPVLCTHDPESPYYQPLNPCIAGTRSQRWISIEHRTTWPSQSRLNSTELDIHGVHSEDFAENTANWDSMVRNYWSLLSPLIFSDHPKRPG
DEDPQPPFNMLRNVLDMNAHFGGFNAALLKAGKSVWVMNVVPTNAPNYLPLIFDRGFIGVQHDWCEAFPTYPRTYDMVHADGFLSLEKHQKHRCSTLDIF
LEVDRILRPEGWVIIRDTAPLIEAARSVVTQLRWDARILDLDIASDEKLLVCQKPFIRKQ

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No