LOC_Os02g50550

Expression Profile

RGAP LOCUS ID LOC_Os02g50550
RAP-DB ID Os02g0738900
Function dynamin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Nuclear
score 2.532

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 99.63
confidence value 0.88
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) BC3|OsDRP2B
Function assigned as per literature DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis
Subcellular localization as per literature Plasma membrane, clathrin-mediated vesicles and also is targeted to the trans-Golgi network (TGN
Cells used for localization experiment Rice and Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20663087
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2010.04308.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.146
NLS score -0.16
Protein Sequence >LOC_Os02g50550.1 protein
MSSSAMEAMDELVQLAESMRQAASLLADDDPSDEASPRRPSTFLNAVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPIVVDLQRDPGLSSKSIVLQI
DSKSQQVSASALRHSLQDRLSKGASGGSGKGRNDEIYLKLRTSTAPPIKLVDLPGIDQRVMDDSTISEYAGHNDAILIVVIPAMQAADVASSRALRLAKD
IDPDGTRTIGVLSKIDQASADAKTVSCVQAILSNKGAPRAAAEIEWVALIGQSVSIASAQAGSVGSENSLETAWQAEAETLKSILTGAPRSKLGRIALVD
TIAKQIRKRMKIRLPNLLSGLQGKSQIVQNELARLGEQMVSSAEGTRAVALELCREFEDKFLAHVTSGEGSGWKIVASFEGKFPDRIKQLPLDRHFDINN
VKRIVLEADGYQPYLISPEKGLKSLIKGVLEMAKEPSRLCVEEVHRVLLDIVNASANATPGLGRYPPFKREVVEIATNALDVFKSDAKKMVVALVDMERA
FVPPQHFIRLVQRRMERQRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGALKSLKEKFSQQDKDKDAKEGPNLQVAGPGGEITAGYLLKKSAKNNEWS
KRWFVLNEKSGKLGYTKKQEERHFRGVIVLEECNLEEIEEEELSKSLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSAVILKAETIADKVEWMKKIR
GVIQSKGGSVKGLNTPEGGSMRQSHSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSKISAQTNAKIEE
LLQEDHNAKRRREKYQKQSSLLSKLTRQLSIHDNRASVASYTNDSSGAESSPRTSGQSGEDWRSAFDSASNGSVDRSSSHNETRSRSADSRGKRYENGDV
NGGNSGSRRTPNRLPPAPPGQKY

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term cell-cell signaling
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
9
GO Category Biological Process
GO Term response to endogenous stimulus
10
GO Category Molecular Function
GO Term hydrolase activity
11
GO Category Cellular comBiological Processonent
GO Term vacuole
12
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No