LOC_Os02g50480

Expression Profile

RGAP LOCUS ID LOC_Os02g50480
RAP-DB ID Os02g0738400
Function histidine kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Cytoplasmic
score 1.142

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Cytoplasm
score 73
confidence value 0.27
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category Orphans

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCKT1|OHK5|OsHk6
Function assigned as per literature OsCKT1 plays important roles in cytokinin perception and control of root development in rice
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28197164
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.00088/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.47
Protein Sequence >LOC_Os02g50480.1 protein
MGKPEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSF
ERPLLNGVAYAQRIFHHEREMFENQQGWIMKTMKRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLT
FAVYRPGLAADASVEERVEATAGCLVVVVSSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKVSLFHVSTLDFG
DPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLVVQRSKILPF
DVGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDPWRYR
QILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDC
VTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFK
GMKAILVDGRPVRGAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDILLLNRLHELKNNGQVHELPKLVLLVTSEAD
KDRYGSAFDIVMYKPIRASTIASCLQQLLKVVMPERKDNQNRPSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHCFDA
CFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTKESAV

GO Analysis
1
GO Category Biological Process
GO Term cellular process
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Molecular Function
GO Term receptor activity
6
GO Category Molecular Function
GO Term signal transducer activity
7
GO Category Biological Process
GO Term flower development
8
GO Category Biological Process
GO Term response to biotic stimulus
9
GO Category Molecular Function
GO Term kinase activity
10
GO Category Biological Process
GO Term transport
11
GO Category Biological Process
GO Term catabolic process
12
GO Category Biological Process
GO Term signal transduction
13
GO Category Biological Process
GO Term response to endogenous stimulus
14
GO Category Molecular Function
GO Term protein binding
15
GO Category Cellular comBiological Processonent
GO Term plasma membrane
16
GO Category Biological Process
GO Term growth
17
GO Category Biological Process
GO Term biological_process
18
GO Category Biological Process
GO Term response to extracellular stimulus
19
GO Category Biological Process
GO Term cell communication
20
GO Category Biological Process
GO Term protein modification process
21
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants No