LOC_Os02g49410

Expression Profile

RGAP LOCUS ID LOC_Os02g49410
RAP-DB ID Os02g0725900
Function histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 1.611

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Nuclear
score 97.07
confidence value 0.5
Number Of Software Predicting Nucleus 2
Seed Specific Yes
Transcription factor category CCAAT/NF_YB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNF-YB1
Function assigned as per literature OsNF-YB1 specifically regulate the transcription of downstream genes during rice endosperm development by forming protein complexes consisting of OsNF-YB1, OsNF-YC and ERF
Subcellular localization as per literature cytosol and the nucleus
Cells used for localization experiment Nicotiana benthamiana (tobacco) leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27803124
Reference of localization https://academic.oup.com/jxb/article/67/22/6399/2374118
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.134
NLS score -0.47
Protein Sequence >LOC_Os02g49410.1 protein
MAGNKKRGGRNMDQVKKAAVRSDGVGGSATNAELPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDL
GFDRYVDPMDAYIHGYREFERAGGNRRVAPPPPAAATPLTPGGPTFTDAELQFLRSVIPSRSDDEYSGSSPAIGGYGYGYGYGKNM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Cellular comBiological Processonent
GO Term intracellular
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term embryo development
10
GO Category Biological Process
GO Term response to abiotic stimulus
11
GO Category Molecular Function
GO Term protein binding
12
GO Category Biological Process
GO Term cellular process
13
GO Category Biological Process
GO Term lipid metabolic process
14
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No