| RGAP LOCUS ID |
LOC_Os02g49230 |
| RAP-DB ID |
Os02g0724000 |
| Function |
CCT/B-box zinc finger protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.72 |
3) NUCPRED
Prediction
|
| localization |
Nuclear |
| score |
0.82 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
89.3 |
| confidence value |
0.49 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
C2C2-CO-like |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
DTH2|OsCOL9|OsCCT08 |
| Function assigned as per literature |
DTH2 Is Involved in Flowering-Time Local Adaptation |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplast |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23388640 |
| Reference of localization |
http://www.pnas.org/content/110/8/2775.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
3 |
| Number of PAT7 |
0 |
| Number of Bipartite |
3 |
| Basic residues % |
0.104 |
| NLS score |
1.95 |
| Protein Sequence |
>LOC_Os02g49230.2 protein
MLISHPMLSNSSGSFHGLYQYTYISPTLTKEWKQTHHYPGRIPLNSTVEQKARKVAVLVALSASGSAPVLYRTMDALCDFCREQRSMVYCRSDAASLCLS
CDRNVHSANALSRRHTRTLLCDRCVGQPAAVRCLEENTSLCQNCDWNGHGAASSAAGHKRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPNCEEGINM
MSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLLPLNSDQPAEPVSTTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENY
EELFGTSHVQTEQLFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQAISNISLSFSGLTGESSAGYFQDCGVSS
MILMGEPPWHPPGPESSSAGGSRDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLSQTRSY |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
