LOC_Os02g45660

Expression Profile

RGAP LOCUS ID LOC_Os02g45660
RAP-DB ID Os02g0680600
Function 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Mitochondrial
score 2.31

3) NUCPRED Prediction
localization Non Nuclear
score 0.32

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.63
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIspF
Function assigned as per literature OsIspF is involved in MEP pathway
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29143298
Reference of localization https://link.springer.com/article/10.1007/s11103-017-0668-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.131
NLS score -0.22
Protein Sequence >LOC_Os02g45660.1 protein
MLVSPSPYRKYFGASGARKKTAGFLSIPQPKKPPNKTAKLARSLRAISPRDDAMATASSLFLASPVATAPTARARSTPSASPARPSLRLRRPSTLAAAAV
QAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLPLIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFMREAVK
LMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term carbohydrate metabolic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term lipid metabolic process
7
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No