LOC_Os02g44780

Expression Profile

RGAP LOCUS ID LOC_Os02g44780
RAP-DB ID Os02g0668100
Function polyprenyl synthetase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 3.194

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.97
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGGPPS2|OsGRP
Function assigned as per literature OsGRP functions in recruiting OsGGPPS1 from the stroma towardthylakoid membranes, thus providing a mechanism to control GGPP flux toward chlorophyll biosynthesis
Subcellular localization as per literature Plastid
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28607067
Reference of localization http://www.pnas.org/content/114/26/6866.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.13
Protein Sequence >LOC_Os02g44780.1 protein
MALSSFSMSLPFAKLPSTSKSTRFLPIRASSAAAAASPSFDLRLYWTSLIADVEAELDAAMPIRTPERIHSAMRYAVLPGAGNEGTAKRAPPVLCVAACE
LLGAPREAALPAAVALEMLHAASLVHDDLPCFDAAPTRRGRPSTHAAYGTDMAVLAGDALFPLAYTHVIAHTPSPDPVPHAVLLRVLGELARAVGSTGMA
AGQFLDLAGATALGEAEVMKVLTKKFGEMAECSAACGAMLGGAGPDEEAALRRYGRTIGVLYQLVDDIRSASGNGKMRSNASVLRALGMDRALGIVEELK
AQAKMEADRFGDKYGERVLPLYSFVDYAVERGFELQDAATTP

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES