LOC_Os02g44360

Expression Profile

RGAP LOCUS ID LOC_Os02g44360
RAP-DB ID Os02g0662700
Function scarecrow transcription factor family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5.5

2) CELLO Prediction
localization Nuclear
score 1.228

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Nuclear
score 68.33
confidence value 0.55
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSCL6-IIb
Function assigned as per literature OsHAM1 regulates phase change in rice
Subcellular localization as per literature Predominately in the nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26023934
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0125833#sec025
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.066
NLS score -0.47
Protein Sequence >LOC_Os02g44360.1 protein
MRAALFGAERSGVVDHGGGDKEELFWPAGKGGLVVVEPRSVLDCTRSPSPPYSTSTLSSSLGGGSADSTGVAAVSESSTAAAGATKWGAPGEHGGGGKEE
WGGGCELPPIPGALDVGLVGGEGWDATATLGNAAGPDQSFLNWIIGAAGDLEQPGPPLPVLQQPLIDNAGFGIPAVDTMGFSLDHPLSGVASDLSSSGAH
TATGGGGKASLGFGLFSPEATSLEQPPPSMLFHEGIDTKPPLLGAQPQFLLNHYQPQPPNPAAALFMPLPPFPEHNHQSPHLQPPLKRHHAIPDDLYLAR
NQQQSSAVAPGLAYSPPLHGPAPFQLHPSPPPIRGAMKSTAAEAAQQQLLDELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLA
LADSHHGSSGVTSPLDVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIGGMATSCIHVIDFDLGVGGQWASFLQELAHRRGAGGMALPLLKLTAFMSTA
SHHPLELHLTQDNLSQFAAELRIPFEFNAVSLDAFNPAELISSSGDEVVAVSLPVGCSARAPPLPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNC
FQSCVFLLDSLDAAGIDADSACKIERFLIQPRVEDAVIGRHKAQKAIAWRSVFAATGFKPVQLSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGE
LVSISSWRC

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term cell differentiation
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cell growth
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Biological Process
GO Term cellular process
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
12
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No