LOC_Os02g43970

Expression Profile

RGAP LOCUS ID LOC_Os02g43970
RAP-DB ID Os02g0657000
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.002

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ARAG1
Function assigned as per literature ARAG1 is an ABA-responsive DREB gene and plays a role in seed germination and drought tolerance of rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermis cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20100696
Reference of localization https://academic.oup.com/aob/article/105/3/401/91967
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.098
NLS score 1.27
Protein Sequence >LOC_Os02g43970.1 protein
MDDSSFGSEPTTSSSGGEAPASPPSTASSSSDGAGGKKKRPRKDGHHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGRA
AHLNFPDLAHELPRPATAAPKDVQAAAALAAAADFPASSANAGASNNPDGSDDASAGSASPPPPPDAADDALFDLPDLLLDLRYGPPSSGLSCASSWEDE
VGLISGAGAAAAGVFRLEEPLLWEY

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No