LOC_Os02g42950

Expression Profile

RGAP LOCUS ID LOC_Os02g42950
RAP-DB ID Os02g0643200
Function YABBY domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 2.34

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.33
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-YABBY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsYABBY4
Function assigned as per literature OsYABBY4 is associated with the GA signaling pathway regulating gene expression during plant growth and development
Subcellular localization as per literature Nucleus
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27578842
Reference of localization https://academic.oup.com/jxb/article/67/18/5545/2485712
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.078
NLS score 0.13
Protein Sequence >LOC_Os02g42950.1 protein
MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEV
AFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAK
NWAHFPHIHFGLMPDQGFKKTFKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF

GO Analysis
1
GO Category Biological Process
GO Term reproduction
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term cell differentiation
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES