LOC_Os02g42600

Expression Profile

RGAP LOCUS ID LOC_Os02g42600
RAP-DB ID Os02g0639000
Function double-stranded RNA binding motif containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Nuclear
score 2.308

3) NUCPRED Prediction
localization Non Nuclear
score 0.63

4) Y-Loc Prediction
localization Nuclear
score 98.7
confidence value 0.47
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLMS
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.11
NLS score -0.13
Protein Sequence >LOC_Os02g42600.1 protein
MIRSMVYFGNTSIGEVEVWPSGDASLAAAAWAREIRVDRLSPPSERCQPLAVMHTVAVGARCLVMESRLPKAADEPPQPLVAMHAACLKENKTAVVPLGE
EELHLVAMTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRYQDDKSILKQ
YIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLL
DPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDF
DEGLLPRISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSSSVAPVAPSL
GMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLNR
GSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSA
GILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVL
PIASTSEETRFVKMGENNSRKAGGSIAALKELCTAEGYNLVFQARTSPDSSVGKEAYAEVEVCGQILGNGVGITWEDAKLQAADEALGMLRSMLGPLAQK
RSSSPRSLAPSFDKRFKPDFPRAVQRVPYGRYSRIEGHVP

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term response to endogenous stimulus
6
GO Category Biological Process
GO Term signal transduction
7
GO Category Molecular Function
GO Term hydrolase activity
8
GO Category Cellular comBiological Processonent
GO Term intracellular
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Molecular Function
GO Term RNA binding
11
GO Category Molecular Function
GO Term protein binding
12
GO Category Biological Process
GO Term metabolic process
13
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No