LOC_Os02g41670

Expression Profile

RGAP LOCUS ID LOC_Os02g41670
RAP-DB ID Os02g0626600
Function phenylalanine ammonia-lyase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Cytoplasmic
score 1.699

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Cytoplasm
score 97
confidence value 0.53
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPAL2;3
Function assigned as per literature OsMAPK11 interacts with OsPAL2;3 to modulate rice allelopathy
Subcellular localization as per literature OsPAL2;3 interacts with OsMAPK11 in the cytoplasm
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31811717
Reference of localization https://academic.oup.com/jxb/advance-article-abstract/doi/10.1093/jxb/erz540/5667447?redirectedFrom=fulltext
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.22
Protein Sequence >LOC_Os02g41670.1 protein
MACENGQVAADGINGLCMAAPRADPLNWGKAAEEMSGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMM
NGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDGHVLSAEATRAAMLVRINTLLQGYSGIRFEILEAITKLLNANVTPCLPLRGTVTAS
GDLVPLSYIAGLVTGRENSVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAVLAEVLSAVFCEVMNGKPEYTDH
LTHKLKHHPGQIEAAAIMEHILEGSSYMKLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRDKALHGGNFQGT
PIGVSMDNTRLAIAAIGKLMFAQFSELVNDYYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAE
AVEILKLMSSTFLVALCQAIDLRQIEENVKSAVKSCVMTVARKTLSTSATGGLHAARFCEKDLLQEIDREAVFAYADDPCSANYPLMKKLRNVLVERALA
NGAAEFNAETSVFAKVAQFEEELRAALPAAVLAARAAVENGTAATPNRITECRSYPLYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLE
CLKEWNGAPLPIC

GO Analysis
1
GO Category Biological Process
GO Term catabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term secondary metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term cytoplasm
10
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants No