LOC_Os02g41550

Expression Profile

RGAP LOCUS ID LOC_Os02g41550
RAP-DB ID Os02g0625000
Function FAD binding domain of DNA photolyase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Cytoplasmic
score 2.199

3) NUCPRED Prediction
localization Non Nuclear
score 0.35

4) Y-Loc Prediction
localization Cytoplasm
score 58
confidence value 0.15
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCRY2|CRY2
Function assigned as per literature
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Onion EpidermalCells
NUCLEAR or Not Nuclear NUCLEAR
PMID 14657402
Reference of localization http://www.plantphysiol.org/content/133/4/1494#F5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.13
Protein Sequence >LOC_Os02g41550.4 protein
MAGSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVY
NHLYDPVSLVRDDKIKKELSALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLESVRSCSVDDLGLESSKDEE
SSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL
CFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYI
SGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAEL
DGEVVEDNLSNIKTFDIPKVVLRETSPCALPIDQRVPHASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANSPVSRKRSFCETAFHVPSYSSSA
EVHSHIQDHGGSLVGPSRYLLQEAGRNYVDEVSLIIIFDRQVLKNLMRYFHLCSFFYQESKHPMKLPPQDL

GO Analysis
1
GO Category Molecular Function
GO Term receptor activity
2
GO Category Molecular Function
GO Term signal transducer activity
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term flower development
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Cellular comBiological Processonent
GO Term nucleus
11
GO Category Cellular comBiological Processonent
GO Term vacuole
12
GO Category Biological Process
GO Term multicellular organismal development
13
GO Category Biological Process
GO Term growth
14
GO Category Biological Process
GO Term cellular homeostasis
15
GO Category Biological Process
GO Term tropism
Presence of Splice variants YES