| RGAP LOCUS ID |
LOC_Os02g41510 |
| RAP-DB ID |
Os02g0624300 |
| Function |
MYB family transcription factor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.506 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.68 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.87 |
| confidence value |
0.88 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
MYB |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsMYB30|OsMYB5P |
| Function assigned as per literature |
OsMYB30 negatively regulate cold tolerance by suppressing the BMY genes via interaction with OsJAZ9 |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
28062835 |
| Reference of localization |
http://www.plantphysiol.org/content/173/2/1475.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.12 |
| NLS score |
0.21 |
| Protein Sequence |
>LOC_Os02g41510.1 protein
MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRT
DNEIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSADHNTTDSFTSEEEFQIDDSFW
SETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDMDDFWLKLFIQAGGMQNLPQI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
