LOC_Os02g40860

Expression Profile

RGAP LOCUS ID LOC_Os02g40860
RAP-DB ID Os02g0622100
Function CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Mitochondrial
score 2.105

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.15
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) hbd2|OsCKI1
Function assigned as per literature OsCKI1 is involved in the regulation of plant root development and hormone-related functions
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 14535884
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1046/j.1365-313X.2003.01866.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.16
NLS score -0.22
Protein Sequence >LOC_Os02g40860.1 protein
MEHVIGGKFKLGRKIGSGSFGELYLGVNIQSSEEVAIKLESVKSRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKF
SLKTVLMLADQMINRVEYMHTRGFLHRDIKPDNFLMGLGRKASQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLG
YVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPTEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQLDYIFDWTKQGSESNRL
RSSGRTSGLVGPSAERTERAAARQDVPDRFSGTVDPFARRTGSGSGHYGEHTKHRNILDSLLAPKTAVDLDKRRPTSSSRNGSTSRKALLSSSRPSSGDP
IDPNRSNLIPTSSGSSRPSTMQRLHQSTGLETRSSLTKTARNVHDDPTLRTFERLSISADRRK

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term kinase activity
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term signal transduction
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No