LOC_Os02g40730

Expression Profile

RGAP LOCUS ID LOC_Os02g40730
RAP-DB ID Os02g0620600
Function ammonium transporter protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization PlasmaMembrane
score 4.682

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.59
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAMT1;2|OsAMT1.2
Function assigned as per literature
Subcellular localization as per literature Plasma membrane when interacts with ACTPK1
Cells used for localization experiment Onion cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29356222
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.13824
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.052
NLS score -0.47
Protein Sequence >LOC_Os02g40730.1 protein
MATCADTLGPLLGTAAANATDYLCNQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGAPSNGF
IGKHFFGLKQVPQVGFDYSFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGSLLFGSGVIDFAGSGVVHM
VGGVAGLWGALIEGPRIGRFDHAGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGPPGSIHGQWSAVGRTAVTTTLAGSTAALTTLFGKRL
QTGHWNVIDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGVIFTALFARKEYVDQIFGQPGRPYGLF
MGGGGRLLGAHIVVILVIAAWVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDDDASGKPDRSVGGFMLKSAHGTQVAAEMGGHV

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Molecular Function
GO Term transporter activity
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term response to biotic stimulus
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No