LOC_Os02g40510

Expression Profile

RGAP LOCUS ID LOC_Os02g40510
RAP-DB ID Os02g0618200
Function response regulator receiver domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.612

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 99.98
confidence value 0.91
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Pseudo ARR-B

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPRR1
Function assigned as per literature controls photoperiodic flowering time
Subcellular localization as per literature Nucleus
Cells used for localization experiment Arabidopsis protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 21549224
Reference of localization https://www.sciencedirect.com/science/article/pii/S1871678411000938?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.114
NLS score 0.83
Protein Sequence >LOC_Os02g40510.1 protein
MVGAGEGDRVGGGAAVGGGQQFVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSKCFKMLKYIARNKE
LRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLSEKNFFNDNFELALSEPSDANTNSTTLLSDDTDDKPKENINQETS
TSNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQASSPGVMFSRPIKTNLRVAESSAFLAYVKSSTPTTSSFDSELQKGGNRLDSSDHRGNFSSTTDRSD
TGTDVNIRDKEAFEMPVQYPVVCFSSSNLHLERSNEGQNDASGTPPVYHFPFYYPGMMDHGMTHPPVQNFQGNINNAQVHTPQTLLPQYNVYPQCHGVSM
MPPFQYNPAGMSIQSNQLPTQNMWPQASSTPMPEETCSRSERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQANYTDITSTGDDISE
DEDDDPSSREVEMVSSPE

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term protein binding
6
GO Category Biological Process
GO Term signal transduction
7
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants No