LOC_Os02g40070

Expression Profile

RGAP LOCUS ID LOC_Os02g40070
RAP-DB ID Os02g0614300
Function AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9.5

2) CELLO Prediction
localization Nuclear
score 3.552

3) NUCPRED Prediction
localization Non Nuclear
score 0.37

4) Y-Loc Prediction
localization Nuclear
score 99.56
confidence value 0.51
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) BBM2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.073
NLS score -0.47
Protein Sequence >LOC_Os02g40070.1 protein
MASANNWLGFSLSGQENPQPHQDSSPPAAIDVSGAGDFYGLPTSQPTAADAHLGVAGHHHNASYGIMEAFNRGAQEAQDWNMRGLDYNGGASELSMLVGS
SGGKRAAAVEETEPKLEDFLGGNSFVSEQDHHAAGGFLFSGVPMASSTNSNSGSNTMELSMIKTWLRNNGQVPAGHQPQQQQPAAAAAAAQQQAHEAAEM
STDASASSFGCSSDAMGRSNNGGAVSAAAGGTSSQSLALSMSTGSHSHLPIVVAGGGNASGGAAESTSSENKRASGAMDSPGGGAIEAVPRKSIDTFGQR
TSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTTTTTNFPISNYEKELDEMKHMTRQEYIAYLRRNSSGFSRGA
SKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPVGGAARRLKEAADHAEAAGATIWR
AADMDGAGVISGLADVGMGAYAASYHHHHHHGWPTIAFQQPPPLAVHYPYGQAPAAPSRGWCKPEQDAAVAAAAHSLQDLQQLHLGSAAAHNFFQASSSS
TVYNGGGGGYQGLGGNAFLMPASTVVADQGHSSTATNHGNTCSYGNEEQGKLIGYDAMAMASGAAGGGYQLSQGSASTVSIARANGYSANWSSPFNGAMG

GO Analysis
1
GO Category Biological Process
GO Term anatomical structure morphogenesis
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No