LOC_Os02g39710

Expression Profile

RGAP LOCUS ID LOC_Os02g39710
RAP-DB ID Os02g0610500
Function CCT/B-box zinc finger protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 5

2) CELLO Prediction
localization Nuclear
score 1.34

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Nuclear
score 99.42
confidence value 0.73
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-CO-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOL4
Function assigned as per literature OsCOL4 is a constitutive flowering repressor upstream of Ehd1and downstream of OsphyB
Subcellular localization as per literature Nucleus
Cells used for localization experiment Oc protoplast cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20409004
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2010.04226.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.47
Protein Sequence >LOC_Os02g39710.1 protein
MEAVEDKAMVGVGGAVAAGYSSSSWGLGTRACDSCGGEAARLYCRADGAFLCARCDARAHGAGSRHARVWLCEVCEHAPAAVTCRADAAALCAACDADIH
SANPLARRHERLPVAPFFGPLADAPQPFPFSQAAADAAAAREEDADDDRSNEAEAASWLLPEPDDNSHEDSAAAADAFFADTGAYLGVDLDFARSMDGIK
AIGVPVAPPELDLTAGSLFYPEHSMAHSLSSSEVAIVPDALSAGSAAPPMVVVVASKGKEREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRF
AKRTADADDDDEAPCSPAFSALAASDGVVPSF

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term binding
4
GO Category Cellular comBiological Processonent
GO Term intracellular
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No