LOC_Os02g39160

Expression Profile

RGAP LOCUS ID LOC_Os02g39160
RAP-DB ID Os02g0603800
Function hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Cytoplasmic
score 2.113

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.73
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHDS
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score 0.03
Protein Sequence >LOC_Os02g39160.1 protein
MATGVAPAPLPHVRVRDGGIGFTRSVDFAKILSVPATLRVGSSRGRVLVAKSSSTGSDTMELEPSSEGSPLLVPRQKYCESIYETRRRKTRTVMVGNVPL
GSDHPIRIQTMTTSDTKDVAKTVEEVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQ
FEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVA
EMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQK
EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVEDAQARLALKRLVDISMGVLTPLSEQLTKPLPHAIAL
VNVDELSSGAHKLLPEGTRLAVTLRGDESYEQLDLLKGVDDITMLLHSVPYGEEKTGRVHAARRLFEYLETNGLNFPVIHHIEFPKSVNRDDLVIGAGAN
VGALLVDGLGDGVLLEAADQEFEFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVSAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG
APGKIDLYVGKTVVQRGIAMEGATDALIQLIKDHGRWVDPPVEE

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Biological Process
GO Term carbohydrate metabolic process
9
GO Category Molecular Function
GO Term binding
10
GO Category Cellular comBiological Processonent
GO Term plastid
11
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No