LOC_Os02g38920

Expression Profile

RGAP LOCUS ID LOC_Os02g38920
RAP-DB ID Os02g0601300
Function glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 14

2) CELLO Prediction
localization Cytoplasmic
score 3.953

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 56
confidence value 0.17
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGAPDH1
Function assigned as per literature OsGAPDH1 is required for glycolytic enzymes activity and gene expression
Subcellular localization as per literature Cytoplasm and nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 28981755
Reference of localization https://academic.oup.com/nar/article/45/21/12241/4157412
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.47
Protein Sequence >LOC_Os02g38920.1 protein
MVSVRAYDWIWLFYGFGRIGRLVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHGQWKHHEVKVKDSKTLIFGTKEVAVFGCRNPEEIPWAAAGAE
YVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHMQGGAKKVVISAPSKDAPMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVH
AITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEEAEGKLKGILGYVEE
DLVSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVIDLIRHMHSTN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term extracellular region
3
GO Category Biological Process
GO Term reproduction
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Biological Process
GO Term generation of precursor metabolites and energy
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Biological Process
GO Term metabolic process
9
GO Category Biological Process
GO Term post-embryonic development
10
GO Category Molecular Function
GO Term binding
11
GO Category Cellular comBiological Processonent
GO Term cytosol
12
GO Category Biological Process
GO Term response to abiotic stimulus
13
GO Category Cellular comBiological Processonent
GO Term mitochondrion
14
GO Category Cellular comBiological Processonent
GO Term plasma membrane
15
GO Category Cellular comBiological Processonent
GO Term plastid
16
GO Category Cellular comBiological Processonent
GO Term nucleus
17
GO Category Biological Process
GO Term biosynthetic process
18
GO Category Biological Process
GO Term cellular process
19
GO Category Biological Process
GO Term biological_process
20
GO Category Cellular comBiological Processonent
GO Term vacuole
21
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No