LOC_Os02g38840

Expression Profile

RGAP LOCUS ID LOC_Os02g38840
RAP-DB ID Os02g0600400
Function glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.344

3) NUCPRED Prediction
localization Non Nuclear
score 0.41

4) Y-Loc Prediction
localization Chloroplast
score 4
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsG6PDH1
Function assigned as per literature OsG6PDH1 is involved in D-allose signal transduction
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Tobacco leaf cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24014866
Reference of localization https://academic.oup.com/jxb/article/64/16/4939/591289
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.126
NLS score -0.47
Protein Sequence >LOC_Os02g38840.1 protein
MSGGSGDSSPSSGRASFSSLSGLKDLELSSESGCLSIVVLGASGDLAKKKTFPALFHLFQQGFLQSGEVHIFGYARSNISDDGLRERIRGYLKGASDEHI
SQFLQLIKYVSGSYNSGEGFASLNNAISENETSKNNKPGSSRRLFYLALPPSVYPSVCKMIRSYCMNPSSHSGWTRVIVEKPFGKDLESAEELSAQLGEL
FNEQQLYRIDHYLGKELVQNLLVLRFANRLFLPLWNRDNIANVQIVFREDFGTEGRGGYFDQYGIIRDIIQNHLLQVFCLVAMEKPVSLKPEHIRDEKVK
VLQSVTPIKHDEVVLGQYDGYKDDSTVPDDSNTPTFASLVLRVNNERWEGVPFILKAGKALNNRKAEIRVQFKDAPGDIFKCKKQGRNEFVIRLQPSEAM
YMKLTVKKPGLEMATEQSELDLSYGLRYQDVKIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHDIDDGKVKALPYKPGTRGPPEADELSKRMG
YVQTHGYVWIPPTLSKF

GO Analysis
1
GO Category Biological Process
GO Term carbohydrate metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term cytosol
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES