LOC_Os02g37920

Expression Profile

RGAP LOCUS ID LOC_Os02g37920
RAP-DB ID Os02g0592300
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 3.806

3) NUCPRED Prediction
localization Nuclear
score 0.84

4) Y-Loc Prediction
localization Nuclear
score 97.95
confidence value 0.48
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPMS1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.116
NLS score 0.96
Protein Sequence >LOC_Os02g37920.1 protein
MAGGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTVADNGTGISPTNFQALALKHHTSKISDFGDLASVATFGF
RGEALSSLCALGKLTVETRTKDEPVGTRLEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVISLLNAYALIAKGVRLVCTNTV
GKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTISEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAKQYPVAVL
NFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMDPAIDGSDEDMCLTEKENVSAPENDDDMDETDSDDEVTPEN
QKVPSSVTTRVATGSTPKDVSPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSIMKFLSQNKRKHEDSCNLISE
APVLRRGTCLEQVRRTDLGVNSPTALTSRVSNIPEVNAPQGTNPLRHHSLQSFVPEMPEDSPQHSEPPNIVSHRDEVPQLRPCDVHATESEVDNQHDPCH
SKFGAPSRCSEVEPQNKLTNISLPDAHYDGHDTAAHSGQSSYPVMQFTLADLRRRRRHSFMISHAKKGSFPEKSTRCYKAATLDNYVPDNEEGKSNSLAA
ATSELDKLFSKDDFVHLQVVGQFNLGFIIGKLDQDLFIVDQHAADEKYNFENLSQSTTLNIQPLLQPLRLDLSPEEEVIVSMNMSTIRKNGFVLAEDLHA
SPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQGDCSIISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHG
RPTMRHLADLHAIKTEGSKATFS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term reproduction
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term DNA metabolic process
7
GO Category Molecular Function
GO Term DNA binding
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term cell cycle
10
GO Category Biological Process
GO Term catabolic process
11
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
12
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No