LOC_Os02g36924

Expression Profile

RGAP LOCUS ID

LOC_Os02g36924

RAP-DB ID

Os02g0579600

Function

OsMADS27 - MADS-box family gene with MIKCc type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

10.5

2) CELLO Prediction

localization

Nuclear

score

3.352

3) NUCPRED Prediction

localization

Non Nuclear

score

0.67

4) Y-Loc Prediction

localization

Nuclear

score

99.98

confidence value

0.95

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

MIKC_MADS

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsMADS27

Function assigned as per literature

OsMADS27 is an important regulator controlling the root system development and adaption to osmotic stress in rice.

Subcellular localization as per literature

OsMADS27 is colocalized with OsSLR1 in nucleus

Cells used for localization experiment

Onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

30466586

Reference of localization

https://www.sciencedirect.com/science/article/pii/S0168945218306046?via%3Dihub

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.146

NLS score

0.02

Protein Sequence

>LOC_Os02g36924.1 protein
MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQL
HNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTP
YNFAVIEKTNVPVQLGLSTLPQHSDAEQSTAPKLGLQLNP

GO Analysis

GO Category	Biological Process
GO Term	post-embryonic development

GO Category	Biological Process
GO Term	cellular process

GO Category	Molecular Function
GO Term	protein binding

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants