LOC_Os02g35329

Expression Profile

RGAP LOCUS ID LOC_Os02g35329
RAP-DB ID Os02g0559800
Function RING-H2 finger protein ATL3F, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Chloroplast
score 1.223

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Cytoplasm
score 91
confidence value 0.47
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) EL5
Function assigned as per literature EL5 is involved in root development through the maintenance of cell viability in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Transgenic callus cells
NUCLEAR or Not Nuclear Not Nuclear
PMID 17559513
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2007.03120.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 2
Number of Bipartite 2
Basic residues % 0.089
NLS score 2.13
Protein Sequence >LOC_Os02g35329.1 protein
MVRGVEQGGPAMDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVD
PEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPEPPASYTVS
LPASVLLGLSDHGAGAVTMTAEGRSTLVIEIPESAASTTPRDAAARSSPSLARLRSLRRLWSFGRQGAAGSTSSCSCATGGDNDDGDVEHGVSVTVAIRA
VEAATPARPPEAEAGARTAAAHVRN

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term response to stress
3
GO Category Molecular Function
GO Term binding
Presence of Splice variants No