| RGAP LOCUS ID |
LOC_Os02g34884 |
| RAP-DB ID |
Os02g0554300 |
| Function |
SacI homology domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
9 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.678 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.29 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
99 |
| confidence value |
0.87 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
GH1 |
| Function assigned as per literature |
GH1 hydrolyzes phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate to regulate cell elongation in rice |
| Subcellular localization as per literature |
Endoplasmic reticulum |
| Cells used for localization experiment |
rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
31882455 |
| Reference of localization |
http://www.plantphysiol.org/content/early/2019/12/27/pp.19.01131 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.116 |
| NLS score |
-0.29 |
| Protein Sequence |
>LOC_Os02g34884.1 protein
MGGANDSSPSSKLHTRLRLWEFPDRYVFEPIDGLADLYLSANRSDGSMNLVEELPPRDSSTKPKCQTVYGVIGVLKLSVGSYFLVITGRDCVGSYLGHAI
FKVTGLKVLPCSNSRSTSGNQSKMETEFSELLHAAEKTIGLYFSYDINLTLTLQRLHNLGDEFKSLPLWRQAEPRFLWNSYLLEPLIENKLDQYLLPVIQ
GSFQNIHAEVGSEKVNVTLIARRCTRRIGTRMWRRGADPEGYAANFVESEQIMESKGFTASYVQVRGSIPFLWVQIVDLTYKPSFDIVRQEEAPRILEQH
FHDLQKKYGAVLAVDLVNTHGGEGRLHDRYAKSIEPILSEDIRYVHFDFHRICGHIHFERLSQLYNQIEDYLKKHRYFLLNGKGEKIEEQTGTIRTNCVD
CLDRTNVTQSMIGGKILENQLQRIGVLGVNDTISNHPAFDAKYKVLWANHGDSISTQYSGTPALKGDFVRYGKRSTQGILNDLWNSLARYYLNNFADGTK
QDAMDLLQGHYIISVSRDMAGPSKAGLLENYASFRLAFALVMGALMFMMMSLRQARNDVRHLVLSLLWAGLCIGITHFVRANGRVFTNRPRFYQSRH |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cell growth |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
